Comparison of the complete genomes of two Echinochloa species: barnyard grass and jungle rice

Jeongran Lee; Jin Won Kim; In Yong Lee; Jong Hwa Ahn

doi:10.1080/23802359.2017.1361355

Comparison of the complete genomes of two Echinochloa species: barnyard grass and jungle rice

Jeongran Lee
, Jin Won Kim
, In Yong Lee
, Jong Hwa Ahn

Department of Environmental Horticulture

Research output: Contribution to journal › Article › peer-review

4 Scopus citations

Abstract

We sequenced and compared the complete chloroplast (cp) genomes of the two Echinochloa species; E. crus-galli (KT983256) and E. colona (KT983255). The size of complete chloroplast genomes of the two species are 139,851 and 139,592 base pairs in length, respectively. They include a pair of inverted repeats (22,640 and 22,618 bp) separated by the small (12,518 and 12,519 bp) and large (82,053 and 81,837 bp) single copy regions. Both chloroplast genomes include a total of 136 genes. Phylogenetic analysis revealed that E. colona was diverged between 2.65 and 3.18 million years ago (Mya) from the E. oryzicola and E. crus-galli.

Original language	English
Pages (from-to)	512-513
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	2
Issue number	2
DOIs	https://doi.org/10.1080/23802359.2017.1361355
State	Published - 12 Dec 2017

Keywords

Chloroplast genome
Echinochloa colona
Echinochloa crus-galli

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10.1080/23802359.2017.1361355

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title = "Comparison of the complete genomes of two Echinochloa species: barnyard grass and jungle rice",

abstract = "We sequenced and compared the complete chloroplast (cp) genomes of the two Echinochloa species; E. crus-galli (KT983256) and E. colona (KT983255). The size of complete chloroplast genomes of the two species are 139,851 and 139,592 base pairs in length, respectively. They include a pair of inverted repeats (22,640 and 22,618 bp) separated by the small (12,518 and 12,519 bp) and large (82,053 and 81,837 bp) single copy regions. Both chloroplast genomes include a total of 136 genes. Phylogenetic analysis revealed that E. colona was diverged between 2.65 and 3.18 million years ago (Mya) from the E. oryzicola and E. crus-galli.",

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doi = "10.1080/23802359.2017.1361355",

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T1 - Comparison of the complete genomes of two Echinochloa species

T2 - barnyard grass and jungle rice

AU - Lee, Jeongran

AU - Kim, Jin Won

AU - Lee, In Yong

AU - Ahn, Jong Hwa

PY - 2017/12/12

Y1 - 2017/12/12

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AB - We sequenced and compared the complete chloroplast (cp) genomes of the two Echinochloa species; E. crus-galli (KT983256) and E. colona (KT983255). The size of complete chloroplast genomes of the two species are 139,851 and 139,592 base pairs in length, respectively. They include a pair of inverted repeats (22,640 and 22,618 bp) separated by the small (12,518 and 12,519 bp) and large (82,053 and 81,837 bp) single copy regions. Both chloroplast genomes include a total of 136 genes. Phylogenetic analysis revealed that E. colona was diverged between 2.65 and 3.18 million years ago (Mya) from the E. oryzicola and E. crus-galli.

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KW - Echinochloa crus-galli

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ER -

Comparison of the complete genomes of two Echinochloa species: barnyard grass and jungle rice

Abstract

Keywords

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