The complete chloroplast genomes of three Korean Echinochloa crus-galli accessions

Gyoungju Nah; Ji Hoon Im; Jin Won Kim; Kyunghee Kim; Jongsung Lim; Ah Young Choi; Ik Young Choi; Tae Jin Yang; Tae Seon Park; Do Kyoung Lee; Do Soon Kim

doi:10.3109/19401736.2015.1089499

The complete chloroplast genomes of three Korean Echinochloa crus-galli accessions

Gyoungju Nah, Ji Hoon Im, Jin Won Kim, Kyunghee Kim, Jongsung Lim, Ah Young Choi, Ik Young Choi, Tae Jin Yang, Tae Seon Park, Do Kyoung Lee, Do Soon Kim

Department of Environmental Horticulture

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Abstract

The complete chloroplast (cp) genomes of three Echinochloa crus-galli accessions (KR822684, KR822685, and KR822686) are reported in this work. The cp genome size is similar in three accessions, ranging from 139 846 bp to 139 860 bp. All three genomes have two inverted repeats (IR) of 22 748 bp per each IR with a large single copy (LSC) region of 81 833–81 844 bp and a small single copy (SSC) region of 12 517–12 520 bp. The total of 131 genes was identified in individual accession. Phylogenetic analysis revealed three Korean Echinochloa accessions belonged to E. crus-galli, and diverged less than 0.1 million years ago (Mya).

Original language	English
Pages (from-to)	4357-4358
Number of pages	2
Journal	Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis
Volume	27
Issue number	6
DOIs	https://doi.org/10.3109/19401736.2015.1089499
State	Published - 1 Nov 2016

Keywords

Echinochloa crus-galli
chloroplast genome
divergence time
next-generation sequencing
phylogenetic tree

Access to Document

10.3109/19401736.2015.1089499

Cite this

@article{7ad151f59d8c4cfb98179c876983443e,

title = "The complete chloroplast genomes of three Korean Echinochloa crus-galli accessions",

abstract = "The complete chloroplast (cp) genomes of three Echinochloa crus-galli accessions (KR822684, KR822685, and KR822686) are reported in this work. The cp genome size is similar in three accessions, ranging from 139 846 bp to 139 860 bp. All three genomes have two inverted repeats (IR) of 22 748 bp per each IR with a large single copy (LSC) region of 81 833–81 844 bp and a small single copy (SSC) region of 12 517–12 520 bp. The total of 131 genes was identified in individual accession. Phylogenetic analysis revealed three Korean Echinochloa accessions belonged to E. crus-galli, and diverged less than 0.1 million years ago (Mya).",

keywords = "Echinochloa crus-galli, chloroplast genome, divergence time, next-generation sequencing, phylogenetic tree",

author = "Gyoungju Nah and Im, {Ji Hoon} and Kim, {Jin Won} and Kyunghee Kim and Jongsung Lim and Choi, {Ah Young} and Choi, {Ik Young} and Yang, {Tae Jin} and Park, {Tae Seon} and Lee, {Do Kyoung} and Kim, {Do Soon}",

note = "Publisher Copyright: {\textcopyright} 2015 Taylor & Francis.",

year = "2016",

month = nov,

day = "1",

doi = "10.3109/19401736.2015.1089499",

language = "English",

volume = "27",

pages = "4357--4358",

journal = "Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis",

issn = "2470-1394",

publisher = "Taylor and Francis Ltd.",

number = "6",

}

TY - JOUR

T1 - The complete chloroplast genomes of three Korean Echinochloa crus-galli accessions

AU - Nah, Gyoungju

AU - Im, Ji Hoon

AU - Kim, Jin Won

AU - Kim, Kyunghee

AU - Lim, Jongsung

AU - Choi, Ah Young

AU - Choi, Ik Young

AU - Yang, Tae Jin

AU - Park, Tae Seon

AU - Lee, Do Kyoung

AU - Kim, Do Soon

PY - 2016/11/1

Y1 - 2016/11/1

N2 - The complete chloroplast (cp) genomes of three Echinochloa crus-galli accessions (KR822684, KR822685, and KR822686) are reported in this work. The cp genome size is similar in three accessions, ranging from 139 846 bp to 139 860 bp. All three genomes have two inverted repeats (IR) of 22 748 bp per each IR with a large single copy (LSC) region of 81 833–81 844 bp and a small single copy (SSC) region of 12 517–12 520 bp. The total of 131 genes was identified in individual accession. Phylogenetic analysis revealed three Korean Echinochloa accessions belonged to E. crus-galli, and diverged less than 0.1 million years ago (Mya).

AB - The complete chloroplast (cp) genomes of three Echinochloa crus-galli accessions (KR822684, KR822685, and KR822686) are reported in this work. The cp genome size is similar in three accessions, ranging from 139 846 bp to 139 860 bp. All three genomes have two inverted repeats (IR) of 22 748 bp per each IR with a large single copy (LSC) region of 81 833–81 844 bp and a small single copy (SSC) region of 12 517–12 520 bp. The total of 131 genes was identified in individual accession. Phylogenetic analysis revealed three Korean Echinochloa accessions belonged to E. crus-galli, and diverged less than 0.1 million years ago (Mya).

KW - Echinochloa crus-galli

KW - chloroplast genome

KW - divergence time

KW - next-generation sequencing

KW - phylogenetic tree

UR - http://www.scopus.com/inward/record.url?scp=85003748385&partnerID=8YFLogxK

U2 - 10.3109/19401736.2015.1089499

DO - 10.3109/19401736.2015.1089499

M3 - Article

C2 - 26466198

AN - SCOPUS:85003748385

SN - 2470-1394

VL - 27

SP - 4357

EP - 4358

JO - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

JF - Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis

IS - 6

ER -

The complete chloroplast genomes of three Korean Echinochloa crus-galli accessions

Abstract

Keywords

Access to Document

Other files and links

Fingerprint

Cite this